recipe bioconductor-quantiseqr

Quantification of the Tumor Immune contexture from RNA-seq data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/quantiseqr.html

License

GPL-3

Recipe

/bioconductor-quantiseqr/meta.yaml

This package provides a streamlined workflow for the quanTIseq method, developed to perform the quantification of the Tumor Immune contexture from RNA-seq data. The quantification is performed against the TIL10 signature (dissecting the contributions of ten immune cell types), carefully crafted from a collection of human RNA-seq samples. The TIL10 signature has been extensively validated using simulated, flow cytometry, and immunohistochemistry data.

package bioconductor-quantiseqr

(downloads) docker_bioconductor-quantiseqr

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-quantiseqr

and update with:

conda update bioconductor-quantiseqr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-quantiseqr:<tag>

(see bioconductor-quantiseqr/tags for valid values for <tag>)

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