- recipe bioconductor-quantiseqr
Quantification of the Tumor Immune contexture from RNA-seq data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/quantiseqr.html
- License:
GPL-3
- Recipe:
This package provides a streamlined workflow for the quanTIseq method, developed to perform the quantification of the Tumor Immune contexture from RNA-seq data. The quantification is performed against the TIL10 signature (dissecting the contributions of ten immune cell types), carefully crafted from a collection of human RNA-seq samples. The TIL10 signature has been extensively validated using simulated, flow cytometry, and immunohistochemistry data.
- package bioconductor-quantiseqr¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-quantiseqr
and update with:
conda update bioconductor-quantiseqr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-quantiseqr:<tag>
(see bioconductor-quantiseqr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-quantiseqr/README.html)