- recipe bioconductor-rawrr
Direct Access to Orbitrap Data and Beyond
This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.
- package bioconductor-rawrr¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-rawrr and update with:: mamba update bioconductor-rawrr
To create a new environment, run:
mamba create --name myenvname bioconductor-rawrr
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-rawrr:<tag> (see `bioconductor-rawrr/tags`_ for valid values for ``<tag>``)