recipe bioconductor-rcas

RNA Centric Annotation System

Homepage

https://bioconductor.org/packages/3.11/bioc/html/RCAS.html

License

Artistic-2.0

Recipe

/bioconductor-rcas/meta.yaml

Links

biotools: rcas

RCAS is an R/Bioconductor package designed as a generic reporting tool for the functional analysis of transcriptome-wide regions of interest detected by high-throughput experiments. Such transcriptomic regions could be, for instance, signal peaks detected by CLIP-Seq analysis for protein-RNA interaction sites, RNA modification sites (alias the epitranscriptome), CAGE-tag locations, or any other collection of query regions at the level of the transcriptome. RCAS produces in-depth annotation summaries and coverage profiles based on the distribution of the query regions with respect to transcript features (exons, introns, 5'/3' UTR regions, exon-intron boundaries, promoter regions). Moreover, RCAS can carry out functional enrichment analyses and discriminative motif discovery.

package bioconductor-rcas

(downloads) docker_bioconductor-rcas

Versions
1.14.0-01.12.0-01.10.1-01.8.0-01.6.0-01.5.4-21.5.4-01.4.0-01.2.0-0

1.14.0-01.12.0-01.10.1-01.8.0-01.6.0-01.5.4-21.5.4-01.4.0-01.2.0-01.1.1-01.0.0-01.0.0.dev75225b9-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rcas

and update with:

conda update bioconductor-rcas

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcas:<tag>

(see bioconductor-rcas/tags for valid values for <tag>)