recipe bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp

RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/RcisTarget.hg19.motifDBs.cisbpOnly.500bp.html

License:

GPL-3

Recipe:

/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml

RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.

package bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp

Versions:

1.17.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.9.0-0,  1.8.0-0,  1.6.0-0, 

1.17.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.9.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0

Depends:

• bioconductor-data-packages >=20221103

• curl

• r-base >=4.2,<4.3.0a0

• r-data.table

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp

and update with:

conda update bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp:<tag>

(see bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/tags for valid values for <tag>)

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