- recipe bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp
RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs
- Homepage:
- License:
GPL-3
- Recipe:
/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml
RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.
- package bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp¶
-
- Versions:
1.17.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.9.0-0
,1.8.0-0
,1.6.0-0
,1.17.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.9.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
- Depends:
bioconductor-data-packages
>=20221103
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp
and update with:
conda update bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp:<tag>
(see bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
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