recipe bioconductor-rcm

Fit row-column association models with the negative binomial distribution for the microbiome

Homepage

https://bioconductor.org/packages/3.14/bioc/html/RCM.html

License

GPL-2

Recipe

/bioconductor-rcm/meta.yaml

Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis.

package bioconductor-rcm

Versions

1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-phyloseq >=1.38.0,<1.39.0

• r-alabama

• r-base >=4.1,<4.2.0a0

• r-ggplot2 >=2.2.1.9000

• r-mass

• r-nleqslv

• r-rcolorbrewer

• r-reshape2

• r-tensor

• r-tseries

• r-vgam

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rcm

and update with:

conda update bioconductor-rcm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcm:<tag>

(see bioconductor-rcm/tags for valid values for <tag>)

Download stats

Link to this page

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