recipe bioconductor-rcm

Fit row-column association models with the negative binomial distribution for the microbiome

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RCM.html

License:

GPL-2

Recipe:

/bioconductor-rcm/meta.yaml

Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis. In addition, diagnostic plot to detect lack of fit are available.

package bioconductor-rcm

Versions:

1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-phyloseq >=1.42.0,<1.43.0

• r-alabama

• r-base >=4.2,<4.3.0a0

• r-dbi

• r-ggplot2 >=2.2.1.9000

• r-mass

• r-nleqslv

• r-rcolorbrewer

• r-reshape2

• r-tensor

• r-tseries

• r-vgam

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rcm

and update with:

conda update bioconductor-rcm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcm:<tag>

(see bioconductor-rcm/tags for valid values for <tag>)

Download stats

Link to this page

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