- recipe bioconductor-rcm
Fit row-column association models with the negative binomial distribution for the microbiome
- Homepage
- License
GPL-2
- Recipe
Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis.
- package bioconductor-rcm¶
-
- Versions
1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-phyloseq
>=1.38.0,<1.39.0
r-base
>=4.1,<4.2.0a0
r-ggplot2
>=2.2.1.9000
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-rcm
and update with:
conda update bioconductor-rcm
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rcm:<tag>
(see bioconductor-rcm/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rcm/README.html)