- recipe bioconductor-rcm
Fit row-column association models with the negative binomial distribution for the microbiome
- Homepage:
- License:
GPL-2
- Recipe:
Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis. In addition, diagnostic plot to detect lack of fit are available.
- package bioconductor-rcm¶
-
- Versions:
1.14.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends:
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-phyloseq
>=1.42.0,<1.43.0
r-base
>=4.2,<4.3.0a0
r-ggplot2
>=2.2.1.9000
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rcm
and update with:
conda update bioconductor-rcm
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rcm:<tag>
(see bioconductor-rcm/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rcm/README.html)