recipe bioconductor-rcwlpipelines

Bioinformatics pipelines based on Rcwl

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/RcwlPipelines.html

License:

GPL-2

Recipe:

/bioconductor-rcwlpipelines/meta.yaml

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

package bioconductor-rcwlpipelines

versions:

1.16.0-0,  1.14.0-1,  1.14.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.2-0,  1.6.0-0,  1.4.0-0

depends bioconductor-biocfilecache:

>=2.8.0,<2.9.0

depends bioconductor-rcwl:

>=1.16.0,<1.17.0

depends bioconductor-s4vectors:

>=0.38.0,<0.39.0

depends nodejs:

>=18

depends r-base:

>=4.3,<4.4.0a0

depends r-git2r:

depends r-httr:

depends r-rappdirs:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rcwlpipelines

and update with::

   mamba update bioconductor-rcwlpipelines

To create a new environment, run:

mamba create --name myenvname bioconductor-rcwlpipelines

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rcwlpipelines:<tag>

(see `bioconductor-rcwlpipelines/tags`_ for valid values for ``<tag>``)

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Link to this page

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