recipe bioconductor-rdgidb

R Wrapper for DGIdb

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/rDGIdb.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-rdgidb/meta.yaml

Links:

biotools: rdgidb, doi: 10.12688/f1000research.9357.1

The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (https://www.dgidb.org/).

package bioconductor-rdgidb

(downloads) docker_bioconductor-rdgidb

versions:
1.28.0-0,  1.26.0-0,  1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0, 

1.28.0-0,  1.26.0-0,  1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.1-0,  1.2.1-0

depends r-base:

>=4.3,<4.4.0a0

depends r-httr:

depends r-jsonlite:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rdgidb

and update with::

   mamba update bioconductor-rdgidb

To create a new environment, run:

mamba create --name myenvname bioconductor-rdgidb

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rdgidb:<tag>

(see `bioconductor-rdgidb/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rdgidb/README.html)