recipe bioconductor-rdrtoolbox

A package for nonlinear dimension reduction with Isomap and LLE.

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/RDRToolbox.html

License:

GPL (>= 2)

Recipe:

/bioconductor-rdrtoolbox/meta.yaml

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

package bioconductor-rdrtoolbox

(downloads) docker_bioconductor-rdrtoolbox

versions:
1.52.0-0,  1.50.0-0,  1.48.0-0,  1.44.0-0,  1.42.0-0,  1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0, 

1.52.0-0,  1.50.0-0,  1.48.0-0,  1.44.0-0,  1.42.0-0,  1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-mass:

depends r-rgl:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rdrtoolbox

and update with::

   mamba update bioconductor-rdrtoolbox

To create a new environment, run:

mamba create --name myenvname bioconductor-rdrtoolbox

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rdrtoolbox:<tag>

(see `bioconductor-rdrtoolbox/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rdrtoolbox/README.html)