recipe bioconductor-reactomecontentservice4r

Interface for the Reactome Content Service

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ReactomeContentService4R.html

License:

Apache License (>= 2.0) | file LICENSE

Recipe:

/bioconductor-reactomecontentservice4r/meta.yaml

Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.

package bioconductor-reactomecontentservice4r

(downloads) docker_bioconductor-reactomecontentservice4r

versions:

1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-0,  1.0.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-data.table:

depends r-doparallel:

depends r-foreach:

depends r-httr:

depends r-jsonlite:

depends r-magick:

>=2.5.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-reactomecontentservice4r

and update with::

   mamba update bioconductor-reactomecontentservice4r

To create a new environment, run:

mamba create --name myenvname bioconductor-reactomecontentservice4r

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-reactomecontentservice4r:<tag>

(see `bioconductor-reactomecontentservice4r/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-reactomecontentservice4r/README.html)