recipe bioconductor-reactomegsa

Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/ReactomeGSA.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-reactomegsa/meta.yaml

The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics gene set analysis. The main advantage of this package is, that the retrieved results can be visualized using REACTOME's powerful webapplication. Since Reactome's analysis service also uses R to perfrom the actual gene set analysis you will get similar results when using the same packages (such as limma and edgeR) locally. Therefore, if you only require a gene set analysis, different packages are more suited.

package bioconductor-reactomegsa

(downloads) docker_bioconductor-reactomegsa

Versions:

1.8.0-01.6.0-01.4.0-11.4.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-reactomegsa

and update with:

conda update bioconductor-reactomegsa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-reactomegsa:<tag>

(see bioconductor-reactomegsa/tags for valid values for <tag>)

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