- recipe bioconductor-reactomegsa
Client for the Reactome Analysis Service for comparative multi-omics gene set analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ReactomeGSA.html
- License:
MIT + file LICENSE
- Recipe:
The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics gene set analysis. The main advantage of this package is, that the retrieved results can be visualized using REACTOME's powerful webapplication. Since Reactome's analysis service also uses R to perfrom the actual gene set analysis you will get similar results when using the same packages (such as limma and edgeR) locally. Therefore, if you only require a gene set analysis, different packages are more suited.
- package bioconductor-reactomegsa¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends:
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-reactomegsa
and update with:
conda update bioconductor-reactomegsa
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-reactomegsa:<tag>
(see bioconductor-reactomegsa/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-reactomegsa/README.html)