recipe bioconductor-reactomegsa

Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ReactomeGSA.html

License

MIT + file LICENSE

Recipe

/bioconductor-reactomegsa/meta.yaml

The ReactomeGSA packages uses Reactome’s online analysis service to perform a multi-omics gene set analysis. The main advantage of this package is, that the retrieved results can be visualized using REACTOME’s powerful webapplication. Since Reactome’s analysis service also uses R to perfrom the actual gene set analysis you will get similar results when using the same packages (such as limma and edgeR) locally. Therefore, if you only require a gene set analysis, different packages are more suited.

package bioconductor-reactomegsa

(downloads) docker_bioconductor-reactomegsa

Versions

1.2.0-0, 1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-reactomegsa

and update with:

conda update bioconductor-reactomegsa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-reactomegsa:<tag>

(see bioconductor-reactomegsa/tags for valid values for <tag>)