recipe bioconductor-reactomegsa

Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ReactomeGSA.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-reactomegsa/meta.yaml

The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics gene set analysis. The main advantage of this package is, that the retrieved results can be visualized using REACTOME's powerful webapplication. Since Reactome's analysis service also uses R to perfrom the actual gene set analysis you will get similar results when using the same packages (such as limma and edgeR) locally. Therefore, if you only require a gene set analysis, different packages are more suited.

package bioconductor-reactomegsa

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggplot2

• r-gplots

• r-httr

• r-jsonlite

• r-progress

• r-rcolorbrewer

• r-tidyr

Required By:

• bioconductor-reactomegsa.data

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-reactomegsa

and update with:

conda update bioconductor-reactomegsa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-reactomegsa:<tag>

(see bioconductor-reactomegsa/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-reactomegsa/README.html)