recipe bioconductor-reconsi

Resampling Collapsed Null Distributions for Simultaneous Inference

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/reconsi.html

License:

GPL-2

Recipe:

/bioconductor-reconsi/meta.yaml

Improves simultaneous inference under dependence of tests by estimating a collapsed null distribution through resampling. Accounting for the dependence between tests increases the power while reducing the variability of the false discovery proportion. This dependence is common in genomics applications, e.g. when combining flow cytometry measurements with microbiome sequence counts.

package bioconductor-reconsi

(downloads) docker_bioconductor-reconsi

versions:

1.14.0-0,  1.12.0-0,  1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

depends bioconductor-phyloseq:

>=1.46.0,<1.47.0

depends r-base:

>=4.3,<4.4.0a0

depends r-ggplot2:

depends r-ks:

depends r-matrix:

depends r-matrixstats:

depends r-reshape2:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-reconsi

and update with::

   mamba update bioconductor-reconsi

To create a new environment, run:

mamba create --name myenvname bioconductor-reconsi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-reconsi:<tag>

(see `bioconductor-reconsi/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-reconsi/README.html)