recipe bioconductor-recount

Explore and download data from the recount project






Explore and download data from the recount project available at Using the recount package you can download RangedSummarizedExperiment objects at the gene, exon or exon-exon junctions level, the raw counts, the phenotype metadata used, the urls to the sample coverage bigWig files or the mean coverage bigWig file for a particular study. The RangedSummarizedExperiment objects can be used by different packages for performing differential expression analysis. Using you can perform annotation-agnostic differential expression analyses with the data from the recount project as described at

package bioconductor-recount

(downloads) docker_bioconductor-recount


1.12.0-0, 1.10.8-0, 1.8.1-0, 1.6.3-0, 1.4.5-0, 1.4.0-0

Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-recount

and update with:

conda update bioconductor-recount

or use the docker container:

docker pull<tag>

(see bioconductor-recount/tags for valid values for <tag>)