recipe bioconductor-recountmethylation

Access and analyze public DNA methylation array data compilations

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/recountmethylation.html

License:

Artistic-2.0

Recipe:

/bioconductor-recountmethylation/meta.yaml

Resources for cross-study analyses of public DNAm array data from NCBI GEO repo, produced using Illumina's Infinium HumanMethylation450K (HM450K) and MethylationEPIC (EPIC) platforms. Provided functions enable download, summary, and filtering of large compilation files. Vignettes detail background about file formats, example analyses, and more. Note the disclaimer on package load and consult the main manuscripts for further info.

package bioconductor-recountmethylation

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

Depends:

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0

• bioconductor-minfi >=1.44.0,<1.45.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-r.utils

• r-rcurl

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-recountmethylation

and update with:

conda update bioconductor-recountmethylation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-recountmethylation:<tag>

(see bioconductor-recountmethylation/tags for valid values for <tag>)

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