recipe bioconductor-recountmethylation

Access and analyze DNA methylation database compilations

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/recountmethylation.html

License:

Artistic-2.0

Recipe:

/bioconductor-recountmethylation/meta.yaml

Access cross-study compilations of DNA methylation array databases. Database files can be downloaded and accessed using provided functions. Background about database file types (HDF5 and HDF5-SummarizedExperiment), SummarizedExperiment classes, and examples for data handling, validation, and analyses, can be found in the package vignettes. Note the disclaimer on package load, and consult the main manuscript for further info.

package bioconductor-recountmethylation

Versions:

1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

Depends:

• bioconductor-biocfilecache >=2.2.0,<2.3.0

• bioconductor-hdf5array >=1.22.0,<1.23.0

• bioconductor-minfi >=1.40.0,<1.41.0

• bioconductor-rhdf5 >=2.38.0,<2.39.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-r.utils

• r-rcurl

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-recountmethylation

and update with:

conda update bioconductor-recountmethylation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-recountmethylation:<tag>

(see bioconductor-recountmethylation/tags for valid values for <tag>)

Download stats

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