bioconductor-recoup

downloads

recoup calculates and plots signal profiles created from short sequence reads derived from Next Generation Sequencing technologies. The profiles provided are either sumarized curve profiles or heatmap profiles. Currently, recoup supports genomic profile plots for reads derived from ChIP-Seq and RNA-Seq experiments. The package uses ggplot2 and ComplexHeatmap graphics facilities for curve and heatmap coverage profiles respectively.

Home http://bioconductor.org/packages/3.6/bioc/html/recoup.html
Versions 1.4.0, 1.6.0
License GPL (>= 3)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-recoup

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-recoup

and update with:

conda update bioconductor-recoup

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-recoup.