recipe bioconductor-refplus

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

Homepage

https://bioconductor.org/packages/3.14/bioc/html/RefPlus.html

License

GPL (>= 2)

Recipe

/bioconductor-refplus/meta.yaml

Links

biotools: refplus, doi: 10.1093/bioinformatics/btm357

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

package bioconductor-refplus

Versions

1.64.0-0,  1.62.0-0,  1.60.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.52.0-0,  1.50.0-0, 

1.64.0-0,  1.62.0-0,  1.60.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.52.0-0,  1.50.0-0,  1.48.0-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-affyplm >=1.70.0,<1.71.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-preprocesscore >=1.56.0,<1.57.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-refplus

and update with:

conda update bioconductor-refplus

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-refplus:<tag>

(see bioconductor-refplus/tags for valid values for <tag>)

Download stats

Link to this page

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