recipe bioconductor-regenrich

Gene regulator enrichment analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RegEnrich.html

License:

GPL (>= 2)

Recipe:

/bioconductor-regenrich/meta.yaml

This package is a pipeline to identify the key gene regulators in a biological process, for example in cell differentiation and in cell development after stimulation. There are four major steps in this pipeline: (1) differential expression analysis; (2) regulator-target network inference; (3) enrichment analysis; and (4) regulators scoring and ranking.

package bioconductor-regenrich

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.1-0,  1.0.0-1

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biocset >=1.12.0,<1.13.0

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-dose >=3.24.0,<3.25.0

• bioconductor-fgsea >=1.24.0,<1.25.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggplot2 >=2.2.0

• r-magrittr

• r-randomforest

• r-reshape2

• r-tibble

• r-wgcna

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-regenrich

and update with:

conda update bioconductor-regenrich

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-regenrich:<tag>

(see bioconductor-regenrich/tags for valid values for <tag>)

Download stats

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