-
recipe
bioconductor-regenrich
Gene regulator enrichment analysis
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/RegEnrich.html
- License
GPL (>= 2)
- Recipe
This package is a pipeline to identify the key gene regulators in a biological process, for example in cell differentiation and in cell development after stimulation. There are four major steps in this pipeline: (1) differential expression analysis; (2) regulator-target network inference; (3) enrichment analysis; and (4) regulators scoring and ranking.
-
package
bioconductor-regenrich
¶ -
- Versions
1.0.0-1
- Depends
bioconductor-biocparallel
>=1.24.0,<1.25.0
bioconductor-biocset
>=1.4.0,<1.5.0
bioconductor-deseq2
>=1.30.0,<1.31.0
bioconductor-dose
>=3.16.0,<3.17.0
bioconductor-fgsea
>=1.16.0,<1.17.0
bioconductor-limma
>=3.46.0,<3.47.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
r-base
>=4.0,<4.1.0a0
r-ggplot2
>=2.2.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-regenrich
and update with:
conda update bioconductor-regenrich
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-regenrich:<tag>
(see bioconductor-regenrich/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-regenrich/README.html)