- recipe bioconductor-remp
Repetitive Element Methylation Prediction
- Homepage:
- License:
GPL-3
- Recipe:
Machine learning-based tools to predict DNA methylation of locus-specific repetitive elements (RE) by learning surrounding genetic and epigenetic information. These tools provide genomewide and single-base resolution of DNA methylation prediction on RE that are difficult to measure using array-based or sequencing-based platforms, which enables epigenome-wide association study (EWAS) and differentially methylated region (DMR) analysis on RE.
- package bioconductor-remp¶
-
- Versions:
1.22.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.1-1
- Depends:
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-impute
>=1.72.0,<1.73.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-minfi
>=1.44.0,<1.45.0
bioconductor-org.hs.eg.db
>=3.16.0,<3.17.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-remp
and update with:
conda update bioconductor-remp
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-remp:<tag>
(see bioconductor-remp/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-remp/README.html)