recipe bioconductor-rexposome

Exposome exploration and outcome data analysis

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/rexposome.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-rexposome/meta.yaml

Package that allows to explore the exposome and to perform association analyses between exposures and health outcomes.

package bioconductor-rexposome

versions:

1.24.1-0,  1.22.0-0,  1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.4-0,  1.12.0-0,  1.10.0-0,  1.8.0-0, 

1.24.1-0,  1.22.0-0,  1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.4-0,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends r-base:

>=4.3,<4.4.0a0

depends r-circlize:

depends r-corrplot:

depends r-factominer:

depends r-ggplot2:

depends r-ggrepel:

depends r-ggridges:

depends r-glmnet:

depends r-gplots:

depends r-gridextra:

depends r-gtools:

depends r-hmisc:

depends r-imputelcmd:

depends r-lme4:

depends r-lsr:

depends r-mice:

depends r-pryr:

depends r-reshape2:

depends r-scales:

depends r-scatterplot3d:

depends r-stringr:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rexposome

and update with::

   mamba update bioconductor-rexposome

To create a new environment, run:

mamba create --name myenvname bioconductor-rexposome

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rexposome:<tag>

(see `bioconductor-rexposome/tags`_ for valid values for ``<tag>``)

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Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rexposome/README.html)