recipe bioconductor-rhdf5

R Interface to HDF5

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/rhdf5.html

License:

Artistic-2.0

Recipe:

/bioconductor-rhdf5/meta.yaml

Links:

biotools: rhdf5

This package provides an interface between HDF5 and R. HDF5's main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other software package, and for letting R applications work on datasets that are larger than the available RAM.

package bioconductor-rhdf5

Versions:

2.42.0-2,  2.42.0-1,  2.42.0-0,  2.38.1-0,  2.38.0-2,  2.38.0-1,  2.36.0-2,  2.34.0-1,  2.34.0-0, 

2.42.0-2,  2.42.0-1,  2.42.0-0,  2.38.1-0,  2.38.0-2,  2.38.0-1,  2.36.0-2,  2.34.0-1,  2.34.0-0,  2.32.0-0,  2.30.0-0,  2.28.0-1,  2.28.0-0,  2.26.2-2,  2.26.2-1,  2.26.2-0,  2.26.1-0,  2.26.0-2,  2.26.0-1,  2.26.0-0,  2.24.0-0,  2.22.0-0,  2.20.0-1,  2.20.0-0,  2.16.0-1,  2.16.0-0,  2.14.0-1,  2.14.0-0,  2.12.0-0

Depends:

• bioconductor-rhdf5filters >=1.10.0,<1.11.0

• bioconductor-rhdf5lib >=1.20.0,<1.21.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• openssl >=3.1.0,<4.0a0

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-cogaps

• bioconductor-nxtirfcore

• bioconductor-genomicscores

• bioconductor-splicewiz

• r-merge-kallisto

• r-recetox-xmsannotator

• bioconductor-eventpointer

• bioconductor-gep2pep

• bioconductor-hdf5array

• bioconductor-recountmethylation

• r-qiime2r

• bioconductor-bnbc

• bioconductor-copynumberplots

• bioconductor-dropletutils

• bioconductor-epigrahmm

• bioconductor-hicbricks

• r-eacon

• bioconductor-cytomapper

• bioconductor-sccb2

• bioconductor-purecn

• bioconductor-mudata

• bioconductor-ribor

• r-calder2

• r-wasabi

• bioconductor-gsca

• bioconductor-citefuse

• bioconductor-loomexperiment

• bioconductor-h5vc

• bioconductor-hicontacts

• bioconductor-ptairms

• bioconductor-hiccompare

• bioconductor-scone

• r-sleuth

• bioconductor-ptairdata

• bioconductor-bgeecall

• r-pore

• bioconductor-mafh5.gnomad.v3.1.1.grch38

• bioconductor-spotclean

• bioconductor-signaturesearchdata

• bioconductor-dmelsgi

• bioconductor-phantasus

• bioconductor-bsseq

• bioconductor-trackviewer

• bioconductor-biomformat

• bioconductor-hicdoc

• bioconductor-cmapr

• bioconductor-diffhic

• bioconductor-octad

• bioconductor-signaturesearch

• bioconductor-mafh5.gnomad.v3.1.2.grch38

• bioconductor-fraser

• r-chromium

• bioconductor-crisprseek

• bioconductor-ioniser

• bioconductor-bayesspace

• bioconductor-ctrap

• r-bcbiornaseq

• bioconductor-mofa2

• bioconductor-methylseqdata

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rhdf5

and update with:

conda update bioconductor-rhdf5

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rhdf5:<tag>

(see bioconductor-rhdf5/tags for valid values for <tag>)

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