recipe bioconductor-riboseqr

Analysis of sequencing data from ribosome profiling experiments

Homepage

https://bioconductor.org/packages/3.10/bioc/html/riboSeqR.html

License

GPL-3

Recipe

/bioconductor-riboseqr/meta.yaml

Links

biotools: riboseqr, doi: 10.1080/15476286.2016.1141862

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

package bioconductor-riboseqr

Versions

1.20.0-0, 1.18.0-1, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends

• bioconductor-bayseq >=2.20.0,<2.21.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rsamtools >=2.2.0,<2.3.0

• bioconductor-seqlogo >=1.52.0,<1.53.0

• r-abind

• r-base >=3.6,<3.7.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-riboseqr

and update with:

conda update bioconductor-riboseqr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-riboseqr:<tag>

(see bioconductor-riboseqr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-riboseqr/README.html)