recipe bioconductor-riboseqr

Analysis of sequencing data from ribosome profiling experiments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/riboSeqR.html

License:

GPL-3

Recipe:

/bioconductor-riboseqr/meta.yaml

Links:

biotools: riboseqr, doi: 10.1080/15476286.2016.1141862

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

package bioconductor-riboseqr

Versions:

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0, 

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-bayseq >=2.31.0,<2.32.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-seqlogo >=1.64.0,<1.65.0

• r-abind

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-riboseqr

and update with:

conda update bioconductor-riboseqr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-riboseqr:<tag>

(see bioconductor-riboseqr/tags for valid values for <tag>)

Download stats

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