recipe bioconductor-riboseqr

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/riboSeqR.html

License

GPL-3

Recipe

/bioconductor-riboseqr/meta.yaml

Links

biotools: riboseqr, doi: 10.1080/15476286.2016.1141862

package bioconductor-riboseqr

Versions

1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends

• bioconductor-bayseq >=2.16.0,<2.17.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-seqlogo >=1.48.0,<1.49.0

• r-abind

• r-base >=3.5.1,<3.5.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-riboseqr

and update with:

conda update bioconductor-riboseqr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-riboseqr:<tag>

(see bioconductor-riboseqr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-riboseqr/README.html)