recipe bioconductor-riboseqr

Analysis of sequencing data from ribosome profiling experiments

Homepage

https://bioconductor.org/packages/3.14/bioc/html/riboSeqR.html

License

GPL-3

Recipe

/bioconductor-riboseqr/meta.yaml

Links

biotools: riboseqr, doi: 10.1080/15476286.2016.1141862

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

package bioconductor-riboseqr

Versions

1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.0-0, 

1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends

• bioconductor-bayseq >=2.28.0,<2.29.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-seqlogo >=1.60.0,<1.61.0

• r-abind

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-riboseqr

and update with:

conda update bioconductor-riboseqr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-riboseqr:<tag>

(see bioconductor-riboseqr/tags for valid values for <tag>)

Download stats

Link to this page

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