recipe bioconductor-ripat

Retroviral Integration Pattern Analysis Tool (RIPAT)

Homepage

https://bioconductor.org/packages/3.14/bioc/html/RIPAT.html

License

Artistic-2.0

Recipe

/bioconductor-ripat/meta.yaml

RIPAT is developed as an R package for retroviral integration sites annotation and distribution analysis. RIPAT needs local alignment results from BLAST and BLAT. Specific input format is depicted in RIPAT manual. RIPAT provides RV integration pattern analysis result as forms of R objects, excel file with multiple sheets and plots.

package bioconductor-ripat

(downloads) docker_bioconductor-ripat

Versions

1.4.0-01.2.0-01.0.0-21.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ripat

and update with:

conda update bioconductor-ripat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ripat:<tag>

(see bioconductor-ripat/tags for valid values for <tag>)

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