recipe bioconductor-rlhub

An ExperimentHub package for accessing processed RLSuite data sets

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/RLHub.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-rlhub/meta.yaml

| RLHub provides a convenient interface to the processed data provided within RLSuite, a tool-chain for analyzing R-loop-mapping data sets. The primary purpose of RLHub is to serve the processed data sets required by the RLSeq R package and the RLBase web service. Additionally, RLHub provides a stand-alone R interface to these data, benefiting users who are addressing questions related to R-loop regions (RL-Regions), R-loop-binding proteins (RLBPs), R-loop co-localizing factors, and the differences between R-loop-mapping methods. The full data-generating protocol is found here: https://github.com/Bishop-Laboratory/RLBase-data.

package bioconductor-rlhub

Versions:

1.4.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-rlseq

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rlhub

and update with:

conda update bioconductor-rlhub

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rlhub:<tag>

(see bioconductor-rlhub/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rlhub/README.html)