recipe bioconductor-rlmm

A Genotype Calling Algorithm for Affymetrix SNP Arrays

Homepage

https://bioconductor.org/packages/3.11/bioc/html/RLMM.html

License

LGPL (>= 2)

Recipe

/bioconductor-rlmm/meta.yaml

Links

biotools: rlmm, doi: 10.1093/bioinformatics/bti741

A classification algorithm, based on a multi-chip, multi-SNP approach for Affymetrix SNP arrays. Using a large training sample where the genotype labels are known, this aglorithm will obtain more accurate classification results on new data. RLMM is based on a robust, linear model and uses the Mahalanobis distance for classification. The chip-to-chip non-biological variation is removed through normalization. This model-based algorithm captures the similarities across genotype groups and probes, as well as thousands other SNPs for accurate classification. NOTE: 100K-Xba only at for now.

package bioconductor-rlmm

(downloads) docker_bioconductor-rlmm

Versions

1.50.0-01.48.0-01.46.0-11.46.0-01.44.0-01.42.0-01.40.0-01.38.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rlmm

and update with:

conda update bioconductor-rlmm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rlmm:<tag>

(see bioconductor-rlmm/tags for valid values for <tag>)