bioconductor-rlmm

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A classification algorithm, based on a multi-chip, multi-SNP approach for Affymetrix SNP arrays. Using a large training sample where the genotype labels are known, this aglorithm will obtain more accurate classification results on new data. RLMM is based on a robust, linear model and uses the Mahalanobis distance for classification. The chip-to-chip non-biological variation is removed through normalization. This model-based algorithm captures the similarities across genotype groups and probes, as well as thousands other SNPs for accurate classification. NOTE: 100K-Xba only at for now.

Home http://bioconductor.org/packages/3.6/bioc/html/RLMM.html
Versions 1.38.0, 1.40.0
License LGPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rlmm

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rlmm

and update with:

conda update bioconductor-rlmm

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-rlmm.