recipe bioconductor-rmagpie

MicroArray Gene-expression-based Program In Error rate estimation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/Rmagpie.html

License

GPL (>= 3)

Recipe

/bioconductor-rmagpie/meta.yaml

Microarray Classification is designed for both biologists and statisticians. It offers the ability to train a classifier on a labelled microarray dataset and to then use that classifier to predict the class of new observations. A range of modern classifiers are available, including support vector machines (SVMs), nearest shrunken centroids (NSCs)… Advanced methods are provided to estimate the predictive error rate and to report the subset of genes which appear essential in discriminating between classes.

package bioconductor-rmagpie

Versions

1.44.0-0, 1.42.0-0, 1.40.0-1, 1.38.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• r-base >=4.0,<4.1.0a0

• r-e1071

• r-kernlab

• r-pamr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rmagpie

and update with:

conda update bioconductor-rmagpie

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rmagpie:<tag>

(see bioconductor-rmagpie/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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