recipe bioconductor-rmassbankdata

Test dataset for RMassBank






Example spectra, example compound list(s) and an example annotation list for a narcotics dataset; required to test RMassBank. The package is described in the man page for RMassBankData. Includes new XCMS test data.

package bioconductor-rmassbankdata

(downloads) docker_bioconductor-rmassbankdata



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rmassbankdata

and update with::

   mamba update bioconductor-rmassbankdata

To create a new environment, run:

mamba create --name myenvname bioconductor-rmassbankdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-rmassbankdata/tags`_ for valid values for ``<tag>``)

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