recipe bioconductor-rnaagecalc

A multi-tissue transcriptional age calculator

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RNAAgeCalc.html

License:

GPL-2

Recipe:

/bioconductor-rnaagecalc/meta.yaml

It has been shown that both DNA methylation and RNA transcription are linked to chronological age and age related diseases. Several estimators have been developed to predict human aging from DNA level and RNA level. Most of the human transcriptional age predictor are based on microarray data and limited to only a few tissues. To date, transcriptional studies on aging using RNASeq data from different human tissues is limited. The aim of this package is to provide a tool for across-tissue and tissue-specific transcriptional age calculation based on GTEx RNASeq data.

package bioconductor-rnaagecalc

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-impute >=1.72.0,<1.73.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-recount >=1.24.0,<1.25.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rnaagecalc

and update with:

conda update bioconductor-rnaagecalc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnaagecalc:<tag>

(see bioconductor-rnaagecalc/tags for valid values for <tag>)

Download stats

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