recipe bioconductor-rnainteractmapk

Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/RNAinteractMAPK.html

License:

Artistic-2.0

Recipe:

/bioconductor-rnainteractmapk/meta.yaml

This package includes all data used in the paper -Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi- by Horn, Sandmann, Fischer et al.., Nat. Methods, 2011. The package vignette shows the R code to reproduce all figures in the paper.

package bioconductor-rnainteractmapk

Versions:

1.36.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.25.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-data-packages >=20221110

• bioconductor-genefilter >=1.80.0,<1.81.0

• bioconductor-rnainteract >=1.46.0,<1.47.0

• curl

• r-base >=4.2,<4.3.0a0

• r-fields

• r-gdata

• r-lattice

• r-mass

• r-sparselda

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rnainteractmapk

and update with:

conda update bioconductor-rnainteractmapk

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnainteractmapk:<tag>

(see bioconductor-rnainteractmapk/tags for valid values for <tag>)

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