recipe bioconductor-rnamodr.ribomethseq

Detection of 2'-O methylations by RiboMethSeq






RNAmodR.RiboMethSeq implements the detection of 2'-O methylations on RNA from experimental data generated with the RiboMethSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

package bioconductor-rnamodr.ribomethseq

(downloads) docker_bioconductor-rnamodr.ribomethseq



depends bioconductor-biocgenerics:


depends bioconductor-genomicranges:


depends bioconductor-gviz:


depends bioconductor-iranges:


depends bioconductor-rnamodr:


depends bioconductor-s4vectors:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rnamodr.ribomethseq

and update with::

   mamba update bioconductor-rnamodr.ribomethseq

To create a new environment, run:

mamba create --name myenvname bioconductor-rnamodr.ribomethseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-rnamodr.ribomethseq/tags`_ for valid values for ``<tag>``)

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