recipe bioconductor-rnaseqcomp

Benchmarks for RNA-seq Quantification Pipelines

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/rnaseqcomp.html

License:

GPL-3

Recipe:

/bioconductor-rnaseqcomp/meta.yaml

Links:

biotools: rnaseqcomp

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

package bioconductor-rnaseqcomp

(downloads) docker_bioconductor-rnaseqcomp

versions:
1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0, 

1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-rcolorbrewer:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rnaseqcomp

and update with::

   mamba update bioconductor-rnaseqcomp

To create a new environment, run:

mamba create --name myenvname bioconductor-rnaseqcomp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rnaseqcomp:<tag>

(see `bioconductor-rnaseqcomp/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rnaseqcomp/README.html)