recipe bioconductor-rnaseqdata.hnrnpc.bam.chr14

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/RNAseqData.HNRNPC.bam.chr14.html

License

LGPL

Recipe

/bioconductor-rnaseqdata.hnrnpc.bam.chr14/meta.yaml

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

package bioconductor-rnaseqdata.hnrnpc.bam.chr14

(downloads) docker_bioconductor-rnaseqdata.hnrnpc.bam.chr14

Versions

0.26.0-00.24.0-00.22.0-10.22.0-00.20.0-10.20.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rnaseqdata.hnrnpc.bam.chr14

and update with:

conda update bioconductor-rnaseqdata.hnrnpc.bam.chr14

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnaseqdata.hnrnpc.bam.chr14:<tag>

(see bioconductor-rnaseqdata.hnrnpc.bam.chr14/tags for valid values for <tag>)