recipe bioconductor-roastgsa

Rotation based gene set analysis

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/roastgsa.html

License:

GPL-3

Recipe:

/bioconductor-roastgsa/meta.yaml

This package implements a variety of functions useful for gene set analysis using rotations to approximate the null distribution. It contributes with the implementation of seven test statistic scores that can be used with different goals and interpretations. Several functions are available to complement the statistical results with graphical representations.

package bioconductor-roastgsa

(downloads) docker_bioconductor-roastgsa

versions:

1.0.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-limma:

>=3.58.0,<3.59.0

depends r-base:

>=4.3,<4.4.0a0

depends r-ggplot2:

depends r-gplots:

depends r-rcolorbrewer:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-roastgsa

and update with::

   mamba update bioconductor-roastgsa

To create a new environment, run:

mamba create --name myenvname bioconductor-roastgsa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-roastgsa:<tag>

(see `bioconductor-roastgsa/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-roastgsa/README.html)