recipe bioconductor-rolde

RolDE: Robust longitudinal Differential Expression

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/RolDE.html

License:

GPL-3

Recipe:

/bioconductor-rolde/meta.yaml

RolDE detects longitudinal differential expression between two conditions in noisy high-troughput data. Suitable even for data with a moderate amount of missing values.RolDE is a composite method, consisting of three independent modules with different approaches to detecting longitudinal differential expression. The combination of these diverse modules allows RolDE to robustly detect varying differences in longitudinal trends and expression levels in diverse data types and experimental settings.

package bioconductor-rolde

versions:

1.6.0-0,  1.4.0-0,  1.2.0-0

depends bioconductor-qvalue:

>=2.34.0,<2.35.0

depends bioconductor-rots:

>=1.30.0,<1.31.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-base:

>=4.3,<4.4.0a0

depends r-doparallel:

depends r-dorng:

depends r-foreach:

depends r-matrixstats:

depends r-nlme:

depends r-rngtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rolde

and update with::

   mamba update bioconductor-rolde

To create a new environment, run:

mamba create --name myenvname bioconductor-rolde

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rolde:<tag>

(see `bioconductor-rolde/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rolde/README.html)