recipe bioconductor-rqt

Despite the recent advances of modern GWAS methods, it still remains an important problem of addressing calculation an effect size and corresponding p-value for the whole gene rather than for single variant. The R- package rqt offers gene-level GWAS meta-analysis. For more information, see: “Gene-set association tests for next-generation sequencing data” by Lee et al (2016), Bioinformatics, 32(17), i611-i619, <doi:10.1093/bioinformatics/btw429>.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/rqt.html

License

GPL

Recipe

/bioconductor-rqt/meta.yaml

package bioconductor-rqt

(downloads) docker_bioconductor-rqt

Versions

1.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rqt

and update with:

conda update bioconductor-rqt

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rqt:<tag>

(see bioconductor-rqt/tags for valid values for <tag>)