recipe bioconductor-rrho

Inference on agreement between ordered lists

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/RRHO.html

License:

GPL-2

Recipe:

/bioconductor-rrho/meta.yaml

Links:

biotools: rrho, doi: 10.1038/nmeth.3252

The package is aimed at inference on the amount of agreement in two sorted lists using the Rank-Rank Hypergeometric Overlap test.

package bioconductor-rrho

versions:

1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0, 

1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-venndiagram:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rrho

and update with::

   mamba update bioconductor-rrho

To create a new environment, run:

mamba create --name myenvname bioconductor-rrho

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rrho:<tag>

(see `bioconductor-rrho/tags`_ for valid values for ``<tag>``)

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