recipe bioconductor-rrvgo

Reduce + Visualize GO

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/rrvgo.html

License:

GPL-3

Recipe:

/bioconductor-rrvgo/meta.yaml

Reduce and visualize lists of Gene Ontology terms by identifying redudance based on semantic similarity.

package bioconductor-rrvgo

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-go.db >=3.16.0,<3.17.0

• bioconductor-gosemsim >=2.24.0,<2.25.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-ggrepel

• r-pheatmap

• r-shiny

• r-tm

• r-treemap

• r-umap

• r-wordcloud

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rrvgo

and update with:

conda update bioconductor-rrvgo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rrvgo:<tag>

(see bioconductor-rrvgo/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rrvgo/README.html)