recipe bioconductor-rtca

Open-source toolkit to analyse data from xCELLigence System (RTCA)

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/RTCA.html

License:

LGPL-3

Recipe:

/bioconductor-rtca/meta.yaml

Links:

biotools: rtca, doi: 10.1016/j.compbiolchem.2013.12.004

Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.

package bioconductor-rtca

(downloads) docker_bioconductor-rtca

versions:
1.58.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0, 

1.58.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.34.1-0,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-0

depends bioconductor-biobase:

>=2.66.0,<2.67.0

depends r-base:

>=4.4,<4.5.0a0

depends r-gtools:

depends r-rcolorbrewer:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rtca

and update with::

   mamba update bioconductor-rtca

To create a new environment, run:

mamba create --name myenvname bioconductor-rtca

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rtca:<tag>

(see `bioconductor-rtca/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rtca/README.html)