recipe bioconductor-rtcga.cnv

CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/RTCGA.CNV.html

License

GPL-2

Recipe

/bioconductor-rtcga.cnv/meta.yaml

Package provides CNV (based on Merge snp) datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving +Data+Using+the+Data+Matrix. Data from 2015-11-01 snapshot.

package bioconductor-rtcga.cnv

(downloads) docker_bioconductor-rtcga.cnv

Versions

1.16.0-01.14.0-01.12.0-11.12.0-01.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtcga.cnv

and update with:

conda update bioconductor-rtcga.cnv

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtcga.cnv:<tag>

(see bioconductor-rtcga.cnv/tags for valid values for <tag>)