recipe bioconductor-rtcga.mutations

Mutations datasets from The Cancer Genome Atlas Project

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/RTCGA.mutations.html

License

GPL-2

Recipe

/bioconductor-rtcga.mutations/meta.yaml

Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot.

package bioconductor-rtcga.mutations

(downloads) docker_bioconductor-rtcga.mutations

Versions

20151101.18.0-020151101.16.0-020151101.14.0-120151101.14.0-020151101.12.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtcga.mutations

and update with:

conda update bioconductor-rtcga.mutations

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtcga.mutations:<tag>

(see bioconductor-rtcga.mutations/tags for valid values for <tag>)