recipe bioconductor-rtrmui

A shiny user interface for rTRM

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/rTRMui.html

License:

GPL-3

Recipe:

/bioconductor-rtrmui/meta.yaml

Links:

biotools: rtrmui, doi: 10.1038/nmeth.3252

This package provides a web interface to compute transcriptional regulatory modules with rTRM.

package bioconductor-rtrmui

Versions:

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-1, 

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0

Depends:

• bioconductor-motifdb >=1.40.0,<1.41.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-org.mm.eg.db >=3.16.0,<3.17.0

• bioconductor-rtrm >=1.36.0,<1.37.0

• r-base >=4.2,<4.3.0a0

• r-shiny >=0.9

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rtrmui

and update with:

conda update bioconductor-rtrmui

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtrmui:<tag>

(see bioconductor-rtrmui/tags for valid values for <tag>)

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