recipe bioconductor-rtrmui

This package provides a web interface to compute transcriptional regulatory modules with rTRM.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/rTRMui.html

License

GPL-3

Recipe

/bioconductor-rtrmui/meta.yaml

Links

biotools: rtrmui, doi: 10.1038/nmeth.3252

package bioconductor-rtrmui

(downloads) docker_bioconductor-rtrmui

Versions

1.20.0-1, 1.20.0-0, 1.18.0-0, 1.16.0-0, 1.14.0-0

Depends bioconductor-motifdb

>=1.24.0,<1.25.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-org.mm.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-rtrm

>=1.20.0,<1.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-shiny

>=0.9

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtrmui

and update with:

conda update bioconductor-rtrmui

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtrmui:<tag>

(see bioconductor-rtrmui/tags for valid values for <tag>)