- recipe bioconductor-ruvseq
Remove Unwanted Variation from RNA-Seq Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/RUVSeq.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: ruvseq
This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.
- package bioconductor-ruvseq¶
-
- Versions:
1.32.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.16.0-0
,1.32.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-edaseq
>=2.32.0,<2.33.0
bioconductor-edger
>=3.40.0,<3.41.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ruvseq
and update with:
conda update bioconductor-ruvseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ruvseq:<tag>
(see bioconductor-ruvseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ruvseq/README.html)