- recipe bioconductor-ruvseq
Remove Unwanted Variation from RNA-Seq Data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/RUVSeq.html
- License
Artistic-2.0
- Recipe
- Links
biotools: ruvseq
This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.
- package bioconductor-ruvseq¶
-
- Versions
1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.16.0-0
,1.14.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-edaseq
>=2.28.0,<2.29.0
bioconductor-edger
>=3.36.0,<3.37.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ruvseq
and update with:
conda update bioconductor-ruvseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ruvseq:<tag>
(see bioconductor-ruvseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ruvseq/README.html)