recipe bioconductor-ruvseq

Remove Unwanted Variation from RNA-Seq Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RUVSeq.html

License:

Artistic-2.0

Recipe:

/bioconductor-ruvseq/meta.yaml

Links:

biotools: ruvseq

This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.

package bioconductor-ruvseq

Versions:

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0, 

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-edaseq >=2.32.0,<2.33.0

• bioconductor-edger >=3.40.0,<3.41.0

• r-base >=4.2,<4.3.0a0

• r-mass

Required By:

• bioconductor-octad

• bioconductor-standr

• bioconductor-scone

• bioconductor-ribosomeprofilingqc

• bioconductor-consensusde

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ruvseq

and update with:

conda update bioconductor-ruvseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ruvseq:<tag>

(see bioconductor-ruvseq/tags for valid values for <tag>)

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