recipe bioconductor-rvisdiff

Interactive Graphs for Differential Expression

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/Rvisdiff.html

License:

GPL-2 | GPL-3

Recipe:

/bioconductor-rvisdiff/meta.yaml

Creates a muti-graph web page which allows the interactive exploration of differential expression results. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.

package bioconductor-rvisdiff

(downloads) docker_bioconductor-rvisdiff

versions:

1.0.0-0

depends bioconductor-edger:

>=4.0.0,<4.1.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rvisdiff

and update with::

   mamba update bioconductor-rvisdiff

To create a new environment, run:

mamba create --name myenvname bioconductor-rvisdiff

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rvisdiff:<tag>

(see `bioconductor-rvisdiff/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rvisdiff/README.html)