recipe bioconductor-rvs

Computes estimates of the probability of related individuals sharing a rare variant

Homepage

https://bioconductor.org/packages/3.12/bioc/html/RVS.html

License

GPL-2

Recipe

/bioconductor-rvs/meta.yaml

Rare Variant Sharing (RVS) implements tests of association and linkage between rare genetic variant genotypes and a dichotomous phenotype, e.g. a disease status, in family samples. The tests are based on probabilities of rare variant sharing by relatives under the null hypothesis of absence of linkage and association between the rare variants and the phenotype and apply to single variants or multiple variants in a region (e.g. gene-based test).

package bioconductor-rvs

Versions

1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends

• bioconductor-snpstats >=1.40.0,<1.41.0

• r-base >=4.0,<4.1.0a0

• r-genlib

• r-grain

• r-kinship2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rvs

and update with:

conda update bioconductor-rvs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rvs:<tag>

(see bioconductor-rvs/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rvs/README.html)