recipe bioconductor-rvs

Computes estimates of the probability of related individuals sharing a rare variant

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/RVS.html

License:

GPL-2

Recipe:

/bioconductor-rvs/meta.yaml

Rare Variant Sharing (RVS) implements tests of association and linkage between rare genetic variant genotypes and a dichotomous phenotype, e.g. a disease status, in family samples. The tests are based on probabilities of rare variant sharing by relatives under the null hypothesis of absence of linkage and association between the rare variants and the phenotype and apply to single variants or multiple variants in a region (e.g. gene-based test).

package bioconductor-rvs

versions:

1.24.0-0,  1.22.0-0,  1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0, 

1.24.0-0,  1.22.0-0,  1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

depends bioconductor-snpstats:

>=1.52.0,<1.53.0

depends r-base:

>=4.3,<4.4.0a0

depends r-genlib:

depends r-grain:

depends r-kinship2:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rvs

and update with::

   mamba update bioconductor-rvs

To create a new environment, run:

mamba create --name myenvname bioconductor-rvs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rvs:<tag>

(see `bioconductor-rvs/tags`_ for valid values for ``<tag>``)

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