bioconductor-sagenhaft

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This package implements several functions useful for analysis of gene expression data by sequencing tags as done in SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison. Sequencing error correction is implementing using an Expectation Maximization Algorithm based on a Mixture Model of tag counts.

Home http://bioconductor.org/packages/3.6/bioc/html/sagenhaft.html
Versions 1.46.0, 1.48.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-sagenhaft

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sagenhaft

and update with:

conda update bioconductor-sagenhaft

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-sagenhaft.