recipe bioconductor-sagenhaft

Collection of functions for reading and comparing SAGE libraries

Homepage

https://bioconductor.org/packages/3.11/bioc/html/sagenhaft.html

License

GPL (>= 2)

Recipe

/bioconductor-sagenhaft/meta.yaml

Links

biotools: sagenhaft, doi: 10.1038/nmeth.3252

This package implements several functions useful for analysis of gene expression data by sequencing tags as done in SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison. Sequencing error correction is implementing using an Expectation Maximization Algorithm based on a Mixture Model of tag counts.

package bioconductor-sagenhaft

(downloads) docker_bioconductor-sagenhaft

Versions

1.58.0-01.56.0-01.54.0-11.54.0-01.52.0-01.50.0-01.48.0-01.46.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sagenhaft

and update with:

conda update bioconductor-sagenhaft

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sagenhaft:<tag>

(see bioconductor-sagenhaft/tags for valid values for <tag>)