recipe bioconductor-santa

Spatial Analysis of Network Associations

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/SANTA.html

License:

GPL (>= 2)

Recipe:

/bioconductor-santa/meta.yaml

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

package bioconductor-santa

(downloads) docker_bioconductor-santa

versions:
2.38.0-1,  2.38.0-0,  2.36.0-0,  2.34.0-2,  2.34.0-1,  2.34.0-0,  2.30.0-2,  2.30.0-1,  2.30.0-0, 

2.38.0-1,  2.38.0-0,  2.36.0-0,  2.34.0-2,  2.34.0-1,  2.34.0-0,  2.30.0-2,  2.30.0-1,  2.30.0-0,  2.28.0-0,  2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-0,  2.14.0-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.3,<4.4.0a0

depends r-igraph:

depends r-matrix:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-santa

and update with::

   mamba update bioconductor-santa

To create a new environment, run:

mamba create --name myenvname bioconductor-santa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-santa:<tag>

(see `bioconductor-santa/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-santa/README.html)