recipe bioconductor-sbgnview.data

Supporting datasets for SBGNview package

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/SBGNview.data.html

License

AGPL-3

Recipe

/bioconductor-sbgnview.data/meta.yaml

This package contains: 1. A microarray gene expression dataset from a human breast cancer study. 2. A RNA-Seq gene expression dataset from a mouse study on IFNG knockout. 3. ID mapping tables between gene IDs and SBGN-ML file glyph IDs. 4. Percent of orthologs detected in other species of the genes in a pathway. Cutoffs of this percentage for defining if a pathway exists in another species. 5. XML text of SBGN-ML files for all pre-collected pathways.

package bioconductor-sbgnview.data

(downloads) docker_bioconductor-sbgnview.data

Versions

1.8.0-01.6.0-01.4.1-01.4.0-01.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sbgnview.data

and update with:

conda update bioconductor-sbgnview.data

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sbgnview.data:<tag>

(see bioconductor-sbgnview.data/tags for valid values for <tag>)

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