- recipe bioconductor-sbgnview
"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/SBGNview.html
- License:
AGPL-3
- Recipe:
SBGNview is a tool set for pathway based data visalization, integration and analysis. SBGNview is similar and complementary to the widely used Pathview, with the following key features: 1. Pathway definition by the widely adopted Systems Biology Graphical Notation (SBGN); 2. Supports multiple major pathway databases beyond KEGG (Reactome, MetaCyc, SMPDB, PANTHER, METACROP) and user defined pathways; 3. Covers 5,200 reference pathways and over 3,000 species by default; 4. Extensive graphics controls, including glyph and edge attributes, graph layout and sub-pathway highlight; 5. SBGN pathway data manipulation, processing, extraction and analysis.
- package bioconductor-sbgnview¶
-
- Versions:
1.8.0-0
,1.6.0-0
,1.4.1-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends:
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-keggrest
>=1.34.0,<1.35.0
bioconductor-pathview
>=1.34.0,<1.35.0
bioconductor-sbgnview.data
>=1.8.0,<1.9.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-sbgnview
and update with:
conda update bioconductor-sbgnview
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-sbgnview:<tag>
(see bioconductor-sbgnview/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-sbgnview/README.html)