recipe bioconductor-scaledmatrix

Creating a DelayedMatrix of Scaled and Centered Values

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ScaledMatrix.html

License:

GPL-3

Recipe:

/bioconductor-scaledmatrix/meta.yaml

Provides delayed computation of a matrix of scaled and centered values. The result is equivalent to using the scale() function but avoids explicit realization of a dense matrix during block processing. This permits greater efficiency in common operations, most notably matrix multiplication.

package bioconductor-scaledmatrix

(downloads) docker_bioconductor-scaledmatrix

versions:

1.10.0-0,  1.8.1-0,  1.6.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-delayedarray:

>=0.28.0,<0.29.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends r-base:

>=4.3,<4.4.0a0

depends r-matrix:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-scaledmatrix

and update with::

   mamba update bioconductor-scaledmatrix

To create a new environment, run:

mamba create --name myenvname bioconductor-scaledmatrix

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-scaledmatrix:<tag>

(see `bioconductor-scaledmatrix/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scaledmatrix/README.html)