recipe bioconductor-scclassify

scClassify: single-cell Hierarchical Classification

Homepage

https://bioconductor.org/packages/3.11/bioc/html/scClassify.html

License

GPL-3

Recipe

/bioconductor-scclassify/meta.yaml

scClassify is a multiscale classification framework for single-cell RNA-seq data based on ensemble learning and cell type hierarchies, enabling sample size estimation required for accurate cell type classification and joint classification of cells using multiple references.

package bioconductor-scclassify

Versions

1.0.0-0

Depends

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-hopach >=2.48.0,<2.49.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-cluster

• r-diptest

• r-ggplot2

• r-ggraph

• r-igraph

• r-matrix

• r-mgcv

• r-minpack.lm

• r-mixtools

• r-proxy

• r-proxyc

• r-statmod

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scclassify

and update with:

conda update bioconductor-scclassify

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scclassify:<tag>

(see bioconductor-scclassify/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scclassify/README.html)