- recipe bioconductor-scclassify
scClassify: single-cell Hierarchical Classification
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/scClassify.html
- License:
GPL-3
- Recipe:
scClassify is a multiscale classification framework for single-cell RNA-seq data based on ensemble learning and cell type hierarchies, enabling sample size estimation required for accurate cell type classification and joint classification of cells using multiple references.
- package bioconductor-scclassify¶
-
- Versions:
1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-cepo
>=1.0.0,<1.1.0
bioconductor-hopach
>=2.54.0,<2.55.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scclassify
and update with:
conda update bioconductor-scclassify
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scclassify:<tag>
(see bioconductor-scclassify/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scclassify/README.html)