recipe bioconductor-scnorm

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SCnorm.html

License

GPL (>= 2)

Recipe

/bioconductor-scnorm/meta.yaml

package bioconductor-scnorm

(downloads) docker_bioconductor-scnorm

Versions

1.4.3-0, 1.2.1-0, 1.0.0-0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

Depends r-data.table

Depends r-forcats

Depends r-ggplot2

Depends r-moments

Depends r-quantreg

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scnorm

and update with:

conda update bioconductor-scnorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scnorm:<tag>

(see bioconductor-scnorm/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scnorm/README.html)