recipe bioconductor-scnorm

Normalization of single cell RNA-seq data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/SCnorm.html

License

GPL (>= 2)

Recipe

/bioconductor-scnorm/meta.yaml

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

package bioconductor-scnorm

Versions

1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.3-0,  1.2.1-0,  1.0.0-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-cluster

• r-data.table

• r-forcats

• r-ggplot2

• r-moments

• r-quantreg

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scnorm

and update with:

conda update bioconductor-scnorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scnorm:<tag>

(see bioconductor-scnorm/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scnorm/README.html)