recipe bioconductor-scnorm

Normalization of single cell RNA-seq data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/SCnorm.html

License:

GPL (>= 2)

Recipe:

/bioconductor-scnorm/meta.yaml

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

package bioconductor-scnorm

Versions:

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.3-0,  1.2.1-0, 

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.3-0,  1.2.1-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-cluster

• r-data.table

• r-forcats

• r-ggplot2

• r-moments

• r-quantreg

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scnorm

and update with:

conda update bioconductor-scnorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scnorm:<tag>

(see bioconductor-scnorm/tags for valid values for <tag>)

Download stats

Link to this page

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