- recipe bioconductor-scone
Single Cell Overview of Normalized Expression data
- Homepage:
- License:
Artistic-2.0
- Recipe:
SCONE is an R package for comparing and ranking the performance of different normalization schemes for single-cell RNA-seq and other high-throughput analyses.
- package bioconductor-scone¶
-
- Versions:
1.22.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.1-0
,1.22.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.1-0
,1.6.0-0
- Depends:
bioconductor-aroma.light
>=3.28.0,<3.29.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-matrixgenerics
>=1.10.0,<1.11.0
bioconductor-rhdf5
>=2.42.0,<2.43.0
bioconductor-ruvseq
>=1.32.0,<1.33.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scone
and update with:
conda update bioconductor-scone
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scone:<tag>
(see bioconductor-scone/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scone/README.html)